課程資訊
課程名稱
生物資訊學導論
Introduction to Bioinformatics 
開課學期
111-1 
授課對象
學程  幹細胞與再生醫學學程  
授課教師
吳泓熹 
課號
Agron5050 
課程識別碼
621EU6390 
班次
 
學分
3.0 
全/半年
半年 
必/選修
選修 
上課時間
星期二3,4,5(10:20~13:10) 
上課地點
 
備註
本課程以英語授課。教室:生物產業自動化中心(鄭江樓505室)
總人數上限:45人 
 
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課程概述

Please refer to the English Syllabus for the latest information.

Bioinformatics is a rapidly evolving field, and it is actively used in multiple areas of research. This interdisciplinary field integrates biology, statistics, and computer science together to analyse and interpret biological data. The course covers the most important and fundamental concepts, methods, and tools used in bioinformatics. Students will be able to use these bioinformatics tools to solve the problems for their own research.

Modules in this course

  1. Basic bioinformatics skills: basic statistics and programming.
  2. Molecular evolution: Multiple sequence alignment and phylogenetic analysis.
  3. Next generation sequencing (NGS) analysis: Genome assembly, genome annotation, and metagenomics.
  4. Other topics in bioinformatics: structural biology, cloud computing, ... etc
 

課程目標
  • Understand that bioinformatics is an interdisciplinary field and communicate with researchers from different backgrounds.
  • Evaluate and identify appropriate bioinformatics software for your own research.
  • Develop problem-solving skills in bioinformatics. Integrate a range of bioinformatics techniques to extract information from biological data.
  • Work collaboratively in groups to solve challenges in the interdisciplinary fields.
 
課程要求
 
預期每週課後學習時數
 
Office Hours
 
指定閱讀
 
參考書目
 
評量方式
(僅供參考)
   
課程進度
週次
日期
單元主題
Week 1
Sep-06  Overview of bioinformatics 
Week 2
Sep-13  Basic bioinformatics skills - Statistics and R programming 
Week 3
Sep-20  Basic bioinformatics skills - Command line 
Week 4
Sep-27  Basic bioinformatics skills - Regular expression 
Week 5
Oct-04  Basic bioinformatics skills - Database and sequence manipulation 
Week 6
Oct-11  Molecular evolution - Sequence alignment 
Week 7
Oct-18  Molecular evolution - Phylogenetic analysis 
Week 8
Oct-25  Molecular evolution - Phylogenetic analysis 
Week 9
Nov-01  Genomic analysis - Modern sequencing methods 
Week 10
Nov-08  Group project - Proposal presentation 
Week 11
Nov-15  Holiday - University Anniversary  
Week 12
Nov-22  Genomic analysis - Genome assembly 
Week 13
Nov-29  Genomic analysis - Genome annotation 
Week 14
Dec-06  Other topics in bioinformatics - Part 1 
Week 15
Dec-13  Other topics in bioinformatics - Part 2 
Week 16
Dec-20  Group project - Final presentation